Relevant Poster
- ACM Student Research Comptition Semi-Finalist Poster: SWAMP Sequence Alignment: Smith-Waterman using Associative Massive Parallelism. Presented at the Grace Hopper 2007 Conference, October 17-20, 2007
IEEE International Parallel & Distributed Processing Symposium: IPDPS 2008
Held April 14-19, 2008 in Miami, Florida
Ph.D. Forum
Expected Graduation Date: December 2008, Advisor: Dr. Johnnie W. Baker
The local Research Page has a brief overview my research, with some additional information about the parallel ASC model.
- Local ASC Reference Page
- ASC Home Page at the Parallel and Associative Research Lab (PACL) at the Kent State University
Research Papers about the associative SIMD ASC sequence alignment
- Shannon Steinfadt and Johnnie W. Baker. SWAMP: Smith-Waterman using Associative Massive Parallelism will be published in the upcoming 9th IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing held concurrently with IPDPS, April 14-19, 2008, Miami, FL. (unofficial version PDF)
- Shannon Steinfadt, Michael Schereger and Johnnie W. Baker. A Local Sequence Alignment Algorithm Using an Associative Model of Parallel Computation. IASTED's Computational and Systems Biology (CASB 2006) November 13-15, 2006, Dallas, TX. (unofficial version PDF)
- Shannon Steinfadt. Local sequence alignment for an associative model of parallel computation. OCCBio 2006 Proceedings, 6/28-30, 2006. Athens, Ohio. Note: this is actually an earlier version of the algorithm that uses a completely different organization. That algorithm was never fully implemented.
Ph.D. Forum Extended Abstract
- To be posted soon
HPSEC Paper Accepted!
The paper entitled SWAMP: Smith-Waterman using Associative Massive Parallelism will be published in the upcoming 9th IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing Workshop held concurrently with IPDPS, April 14-19, 2008, Miami, FL. This paper was co-authored with my advisor, Dr. Johnnie W. Baker.
