Johnnie W. Baker

Refereed or Invited Presentations Made by Baker

2010 Mike Yuan, Johnnie Baker, Frank Drews, Lev Neiman, and Will Meilander, "An Efficient Associative Processor Solution to an Air Traffic Control Problem", Large Scale Parallel Processing IEEE Workshop at the International Parallel and Distributed Computing Symposium (IPDPS2010), published on IPDPS-2010 CDROM and in the IEEE Digital Library with other IPDPS-2010 publications, April 2010.

2008 Shannon Steinfadt and Johnnie Baker, "GPU Computing for the SWAMP Sequence Alignment", Presentation at the Ohio Collaborative Conference on Bioinformatics Conference (OCCBIO'08). June, 2008, presentation by Shannon Steinfadt


2004 Johnnie Baker, "SIMDs Revisited", Invited Colloquium, Computer Science Department, Old Dominion University, Norfolk, VA., Scheduled, March 3, 2004.

2003 Will Meilander, Johnnie Baker, and Mingxian Jin, "Importance of SIMD Computation Reconsidered", Proc. of the 17th International Parallel and Distributed Processing Symposium (IEEE Workshop on Massively Parallel Processing), abstract on page 266, full text on CDROM, presented at Nice, France, April 2003.

1999 Johnnie W. Baker and Mingxian Jin, "Simulations of Enhanced Meshes with MASC, a MSIMD Model", Proc. of the 11th IASTED International Conference on Parallel and Distributed Computing and Systems, pages 511-516, presented at Cambridge, MA, November, 1999.

1999 Johnnie W. Baker and Mingxian Jin, "Simulations between Enhanced Meshes and the Multiple Associative Computing (MASC) Model", Proc. of the 1999 Midwest Workshop on Parallel Processing (MWPP'99), presented at Kent, OH, August 1999.

1998 Darrell Ulm and Johnnie Baker, "Simulating PRAM with a MSIMD Model (ASC)", Proc. of the International Conference on Parallel Processing, pages 3-10, presented at Minneapolis, MN, August, 1998.

1996 Johnnie W. Baker, "An Associative Model of Computation", Invited Colloquium presented to the Department of Computing and Information Science at Queens University, Kingston, Ontario (Canada)

1996 Johnnie W. Baker, "An Associative Model of Computation", Invited Colloquium presented to the Department of Computer Science at Old Dominion University in Norfolk, VA.

1995 Johnnie W. Baker, "An Associative Model for Parallel Computation", presented at the special session titled "Foundations and Mathematical Aspects of Computer Science" Fall 1995 Regional Meeting of The American Mathematical Society at Kent State.

1992 Stephen Scott and Johnnie W. Baker , "Embedding the Hypercube into the 3-Dimensional Mesh" , Proceedings of the 4th Symposium on the Frontiers of Massively Parallel Computation, Edited by H. J. Siegel, pages 577-8, paper presented at Goddard Space Flight Center in McLean VA, October, 1992.

1990 Johnnie W. Baker and Andrew Miller, "A Parallel Production System Extending OPS5", Proceedings of the 3rd Symposium on the Frontiers of Massively Parallel Computation, edited by Joseph JaJa, pages 110-118, paper presented at The University of Maryland at College Park, October, 1990.

1985 John Warren Baker, Oberta Slotterbeck, and Richard Aron, "An Algorithm for Tsirelson Space Norm", International Conference on Banach Spaces and Classical Analysis, Special Session on Using Computers in Mathematical Research.

1985 John Warren Baker, Oberta Slotterbeck, and Richard Aron, "A Computer Algorithm for Tsirelson Space Norm", Invited address at the MAA Sectional Meeting at the University of Akron, Special Session on Scientific Computing.

1974 John Warren Baker, "Projection Constants of C(X) Spaces with the Separable Projection Property", Invited colloquium, Pennsylvania State University, Mathematics Department.

1974 John Warren Baker, "Extensions of O-dimensional Metric Spaces", Paper presentation, Annual General Topology Conference, University of North Carolina at Charlotte.

1974 John Warren Baker, "Extensions of O-dimensional Metric Spaces", Paper presentation, International Congress of Mathematicians, Vancouver, Canada.

1974 John Warren Baker, "Extension of Homeomorphisms over Metric Spaces", Invited speaker, Regional Functional Analysis Conference, Ohio State University.

1974 John Warren Baker, "Ordinals as Topological Spaces", Invited speaker, Regional Topology Conference, Carnegie- Mellon University.

1973 John Warren Baker, "The Separable Projection Property", Invited Speaker, Symposium on Approximation Theory, University of Texas at Austin.

1973 John Warren Baker, "The Separable Projection Property", Conference on Best Approximation and Functional Analysis, Kent State University.

Refereed or Invited Presentations

(Presented by a colleague; No published paper)

2008 Shannon Steinfadt and Johnnie Baker, "GPU Computing for the SWAMP Sequence Alignment", Presentation at the Ohio Collaborative Conference on Bioinformatics Conference (OCCBIO'08). June, 2008, presentation by Shannon Steinfadt

1999 Will Meilander, Johnnie Baker, and Jerry Potter "In Air Traffic Control - the Solution is the Problem", The 1st International Workshop on Real-Time Mission Critical Systems, Theme: Grand Challenge Problems, Phoenix AZ, Copies of paper distributed at workshop, presentation by Will Meilander.

1997 Chun-che Tsai, K.J. McCabe, P. J. Durand, M.L. Lesniewski, and J. W. Baker, "QSAR Studies of Nucleoside Analogs with Anti-HIVF Activity", Tenth International Conference on Antiviral Research, Atlanta, GA, April 6-11, 1997, Presentation by Chun-che Tsai

1996 Chun-che Tsai, P.J. Durand, K.J. Taylor-McCabe, and J.W. Baker. "Structure-Activities Relationship Studies of Nucleoside Analogs with Anti-HIV Activity", Ninth International Conference on Anti-viral Research, held in Urabandai, Fukushima, Japan, May 19-24, 1996, Presentation was by Prof. Tsai.

1995 Chun-che Tsai, P. J. Durand, J. W. Baker "A Topological Approach to Molecular Similarity Analysis and its Application to QSAR Study of Nucleoside Analogs with anti-HIV Activity", Special Session on Mathematical and Computational Chemistry and Biology, Fall 1995 Regional Meeting of The American Mathematical Society at Kent State University. Presentation was by Prof. Tsai.

1995 Chun-che Tsai, P. J. Durand, K. J. McCabe, and J. W. Baker, "QSAR Study IV of Nucleoside Analogs with Anti-HIV Activities Using Molecular Similarity Analysis and Structure-Activity Maps". Presented at the 1995 U.S. Army Edgewood Research Development and Engineering Center Scientific Conference on Chemical and Biological Defense Research, held at the Aberdeen Proving Ground, MD, Nov. 14-17, 1995, Presentation was by Prof. Tsai.

1995 Chun-che Tsai, P. J. Durand, K. J. McCabe, and J.W. Baker, "QSAR Study III of Nucleoside Analogs with Anti-HIV Activities Using Molecular Similarity Analysis and Structure-Activity Maps". Presented at the 210th American Chemical Society National Meeting, held in Chicago, Illinois, August 20-24, 1995. Invited address, Presentation was by Prof. Tsai.

1995 Chun-che Tsai, P. J. Durand, K. J. McCabe, and J.W. Baker, "QSAR Study II of Nucleoside Analogs with Anti-HIV Activities Using Molecular Similarity Analysis and Structure-Activity Maps",. Presented at the Gordon Conference on Quantitative Structure-Activity Relationships, held in Tilton, NH, August 6-11, 1995, Presentation was by Prof. Tsai.

1995 Chun-che Tsai, P. J. Durand, K. J. McCabe, and J.W. Baker "QSAR Study I of Nucleoside Analogs with Anti-HIV Activities Using Molecular Similarity
Analysis and Structure-Activity Maps". Presented at the Eighth International Conference on Antiviral Research, held at Santa Fe, New Mexico, April 23-28, 1995, Presentation was by Prof. Tsai.

1989 John Warren Baker, Oberta Slotterbeck, and Richard Aron, "Computing the Tsirelson Space Norm", Long presentation , Computer Aided Proofs in Analysis, University of Cincinnati. Presenter was R. Aron.

1985 Oberta Slotterbeck and Johnnie Baker, "Providing a Complex Number Environment for MACSYMA and VAXIMA", Invited MAA Sectional Meeting at The University of Akron, Special Session on Scientific Computing, Presenter was O. Slotterbeck.

1984 Oberta Slotterbeck and Johnnie Baker, "Computer Algebra Systems: Multi-disciplinary Research Tools", Invited Colloquium to College of Sciences at the University of Texas at Austin (sponsored by the Computer Science Department at U.T.). Presenter was O. Slotterbeck.

SUPERVISED PRESENTATIONS AND POSTERS BY MY STUDENTS
(Refereed unless at Kent State)


1. Shannon Steinfadt, "Harnessing Associative Computing for Sequence Alignment with Parallel Accelerators" Doctoral Research Showcase at the International Conference for High Performance Computing, Networking, Storage and Analysis (SC '08), Austin, Texas, November 20, 2008, ~25% acceptance rate


2. Shannon Steinfadt, Plenary Session: "GPU Computing for the SWAMP Sequence Alignment" at the Ohio Collaborative Conference on Bioinformatics, University of Toledo, Toledo, Ohio, June 3, 2008


3. Shannon Steinfadt, "Massively Parallel Sequence Alignment in Bioinformatics: SWAMP: Smith-Waterman using Associative Massive Parallelism" ACM Student Research Competition Semi-Finalist Talk, Grace Hopper Conference, Orlando, FL October 18, 2007


4. Shannon Steinfadt, "SWAMP: Smith-Waterman on an Associative Multi-Processor", Ph.D. Forum at Grace Hopper Conference October 19, 2007