Papers
| Date | Author(s) | Paper Title | ACM Citation | Keywords | |
|---|---|---|---|---|---|
| 5/22/07 | Eric C. Rouchka | Aligning DNA Sequences Using Dynamic Programming | Rouchka, E. C. 2006. Aligning DNA sequences using dynamic programming. Crossroads 13, 1 (Sep. 2006), 9-9. DOI= http://doi.acm.org/10.1145/1217666.1217675 | Sequencing and scheduling, computations on matrices, dynamic programming, algorithms | |
| 5/30/07 | James D. Allen and David E. Schimmel | The Impact of Pipelining on SIMD Architectures | Allen, J. D. and Schimmel, D. E. 1995. The impact of pipelining on SIMD architectures. In Proceedings of the 9th international Symposium on Parallel Processing (April 25 - 28, 1995). IPPS. IEEE Computer Society, Washington, DC, 380-387. | SIMD, Pipelined, Data Parallel, Scheduling | Local Copy * |
| 6/6/07 | Tim Oliver, Bertil Schmidt and Douglas Maskell | Hyper customized processors for bio-sequence database scanning on FPGAs | Oliver, T., Schmidt, B., and Maskell, D. 2005. Hyper customized processors for bio-sequence database scanning on FPGAs. In Proceedings of the 2005 ACM/SIGDA 13th international Symposium on Field-Programmable Gate Arrays (Monterey, California, USA, February 20 - 22, 2005). FPGA '05. ACM Press, New York, NY, 229-237. DOI= http://doi.acm.org/10.1145/1046192.1046222 | FPGA, Smith-Waterman, bioinformatics, dynamic re-configuration | Local Copy |
| 6/6/07 | Ujval J. Kapasi, William J. Dally, Scott Rixner, John D. Owens, and Brucek Khailany | The Imagine Stream Processor | 2002. The Imagine Stream Processor. In Proceedings of the 2002 IEEE international Conference on Computer Design: VLSI in Computers and Processors (Iccd'02) (September 16 - 18, 2002). ICCD. IEEE Computer Society, Washington, DC, 282. | Local Copy | |
| 6/29/07 | R.M. Tomasulo | An Efficient Algorithm for Exploiting Multiple Arithmetic Units | N/A: Tomasulo, R. M., "An Efficient Algorithm for Exploiting Multiple Arithmetic Units," IBM Journal of Research and Development, vol. 11, 1967, pp 25 - 33. Principles and Examples, McGraw-Hill, 1982. | Local Copy | |
| 7/12/07 | David A. Bader | Computational Biology And High-Performance Computing | Bader, D. A. 2004. Computational biology and high-performance computing. Commun. ACM 47, 11 (Nov. 2004), 34-41. DOI= http://doi.acm.org/10.1145/1029496.1029523 | Link to PDF | |
| 7/12/07 | Jerry Potter and Howard Jay Siegel | Software Support for Non-Numerical Computing on Multi-core Chips | N/A | Local Copy | |
| 7/19/07 | Michael Farrar | Striped Smith–Waterman speeds database searches six times over other SIMD implementations |
Farrar, M. 2007. Striped Smith--Waterman speeds database searches six times over other SIMD implementations. Bioinformatics 23, 2 (Jan. 2007), 156-161. DOI= http://dx.doi.org/10.1093/bioinformatics/btl582 | Local Copy | |
| 7/25/07 | S.S. Yau and H.S. Fung | Associative Processor Architecture—a Survey | Yau, S. S. and Fung, H. S. 1977. Associative Processor Architecture—a Survey. ACM Comput. Surv. 9, 1 (Mar. 1977), 3-27. DOI= http://doi.acm.org/10.1145/356683.356685 | SIMD, associative processing, STARAN, PEPE | Local Copy |
| 8/1/07 | Behrooz Parhami | Search And Data Selection Algorithms For Associative Processors | N/A from ACM: Book chapter in Associative Processing and Processors, Edited by A. Krikelis and C. Weems, IEEE Computer Society Press, pp. 10-25, 1997. | ||
| 8/9/07 | Kirk Twardowski | An Associative Architecture for Genetic Algorithm-Based Machine Learning | N/A from ACM: Book chapter in Associative Processing and Processors, Edited by A. Krikelis and C. Weems, IEEE Computer Society Press, pp. 10-25, 1997. | Local Copy | |
| 8/9/07 | James. O Hamblen and Michael D. Furman | Rapid Prototyping of Digital Systems | Chapter 1: The 15 Minute Design on the Altera Board | ||
| 8/15/07 | N/A | Proposal for Study of Application of Associative Processors to Aircraft Collision Avoidance | GAP-68-4669. 24 January 1968. Goodyear Aerospace Corporation, Akron, Ohio. Sections I (Introduction) and II (Technical Discussion). Section V: Related Experience and Appendix A: Basic Associative Processor Organization |
For local use only: Sections I and II |
