Shannon Steinfadt and Johnnie W. Baker. SWAMP: Smith-Waterman using Associative Massive Parallelism will be published in the upcoming 9th IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing Workshop held concurrently with IPDPS, April 14-19, 2008, Miami, FL.
Shannon Steinfadt, Michael Schereger and Johnnie W. Baker. A Local Sequence Alignment Algorithm Using an Associative Model of Parallel Computation. IASTED's Computational and Systems Biology (CASB 2006) November 13-15, 2006, Dallas, TX. (unofficial version PDF)
S. Steinfadt & Ellen L. Walker. Don’t Panic: Friendly Advice on Teaching Your First Course as a Graduate Assistant. MidWIC 2006 proceedings, 9/29-30, 2006, Greencastle, IN. (unofficial version PDF)
Shannon Steinfadt. Local sequence alignment for an associative model of parallel computation. OCCBio 2006 Proceedings, 6/28-30, 2006. Athens, Ohio. Note: this is actually an earlier version of the algorithm that uses a completely different organization. That algorithm was never fully implemented.
